BASIC PRINCIPLES OF PHYLOGENETIC TAXONOMY
(sensu Bechly):
- Only (hypothetical) time-biospecies and
(sufficiently well supported) clades (monophyletic groups
of biparental species) or clones (monophyletic groups of
uniparental organisms) may be scientifically named. All
taxa above the species-group level must be demonstrably
monophyletic. Traditional taxa that are probably
paraphyletic but can not yet be split into several
monophyletic taxa, and metataxa that have neither been
demonstrated to be monophyletic, nor paraphyletic, may be
preliminarily included in a phylogenetic classification if
and only if they are clearly indicated by quotation
marks.
- All recognized fossil and extant species and
monophyla must be scientifically named. Sequencing is
rejected as principle of classification.
- The diagnosis of a new species must include at
least one safe diagnostic character (preferably an
autapomorphy) or a 100% diagnostic combination of
characters, while the diagnosis of a new clade always must
include at least one convincing autapomorphy. Preferably a
list of all known important autapomorphies should be
provided with the description of a new taxon.
- In the original description of a new species,
the underlying species concept should be clearly
specified.
- Each new description of a supraspecific taxon
has to be provided with a recommened usage (list of
included taxa).
Contrary to previous statements of mine, I do not longer
regard standardized phylogenetic definitions as necessary
or useful, because such definitions do not guarantee the
stable associating of a taxon name with a precisely
specified clade, since this association is always highly
depending on the underlying phylogenetic hypotheses.
Consequently, phylogenetic definitions only provide stable
names for unstable concepts and are rather ignorant to the
content of the taxa (DOMINGUEZ & WHEELER, 1997).
- Names of monophyletic groups have to be
regarded as synonyms if and only if they refer to exactly
the same clade. Names originally proposed for polyphyletic
and paraphyletic groups have to be regarded as synonyms of
the least inclusive clade that contains the complete
polyphylum or paraphylum as specified in the original
description. If there is clear evidence in the original
publication that the author intended to name a clade
different from the least inclusive clade that includes all
enumerated members, because the author did not know certain
taxa (e.g. that were not yet described), forgot to mention
certain taxa, or accidently or erroneously included or
excluded certain taxa, the intention of the author is to be
preferred. (Please note: This rule is in conflict with the
current regulations of IRZN, which completely ignores the
content of taxa and therefore allows names of different
clades to be nomenclatural synonyms!)
- The first published name that was explicitly
associated to a certain clade has priority and should
become the only valid name for this clade, except when a
well-established name would have to be replaced by a hardly
known older synonym, or when this would imply a serious
alteration of the traditional usage of the refering names,
or if the use of the older synonym could cause considerable
confusion. (Please note: This rule is in conflict with the
current regulations of IRZN, which completely ignores the
content of taxa and therefore allows names of different
clades to be nomenclatural synonyms!)
- In case of homonymy the junior homonym has to
be replaced by the oldest available synonym or a new name
if no synonym is available. The replacement of the senior
homonym may be preferred if and only if this would imply a
significantly less serious alteration of the traditional
usage of the refering names than the replacement of the
junior homonym. (Please note: This rule might conflict with
the current regulations of IRZN, since the latter does only
consider homonymy within family-group, genus-group, and
species-group taxa, but not between those groups!)
- Long established and well-known taxon names
(e.g. Mammalia) should be preferably used for the referring
crown-group (the least inclusive monophyletic group that
includes all extant representatives). In case of a taxon
name that refers to a certain character (e.g. Tetrapoda,
Pinnipedia, Pterygota), the name should be used for the
least inclusive monophyletic group that includes all
species that posess this character by homology.
- Categorical ranks above the species-group level
are rejected as biologically meaningless and arbitrary
constructs, unless there will be established a new ranking
system in which the categorical ranks are associated with a
certain age of origin of the referring taxa. Likewise
standardized prefixes or suffixes are generally rejected.
Consequently, sistergroups do not have to have the same
"rank" or suffix. The encaptic hierarchy of
groups within groups is therefore indicated by
corresponding indentions of the names in the written
classification; sistergroups are indented on the same
level. (Please note: This rule is in conflict with the
current regulations of IRZN, which are strongly rooted in
the obligatory usage of categorical ranks!)
- Taxa of uncertain phylogenetic position are
indicated with the remark "incertae
sedis", and taxa within an unresolved polytomy
are indicated with the remark "sedis
mutabilis".
- If a fossil stem-species can be identified as
such, it has to be listed in parentheses on the same line
and in front of the name of the taxon that originated from
this stem-species. Hybrid-species (incl. cleptons) are
listed twice in the classification, after their two parent
species respectively (on the same line, separated by a
semicolon).
REFERENCES:
ARCHIBALD, J.D. (1994): Metataxon concepts and assessing
possible ancestry using Phylogenetic Systematics. Syst.
Biol., 43(1): 27-40
AX, P. (1988): Systematik in der Biologie. Fischer:
Stuttgart. 181 pp.
BRYANT, H.N. (1994): Comments on the phylogenetic definition
of taxon names and conventions regarding the naming of crown
clades. Syst. Biol., 43(1): 124-130
BRYANT, H.N. (1996): Explicitness, stability, and
universality in the phylogenetic definition and usage of
taxon names: A case study of the phylogenetic taxonomy of the
Carnivora (Mammalia). Syst. Biol., 45(2):
174-189
CANTINO P.D. & OLMSTEAD R.G. & WAGSTAFF S.J. (1997):
A comparison of phylogenetic nomenclature with the current
system: A botanical case study. Syst. Biol., 46(2):
313-331
DE QUEIROZ, K. (1994): Replacement of an essentialistic
perspective on taxonomic definitions as exemplified by the
definition of "Mammalia". Syst. Biol.,
43(4): 497-510
DE QUEIROZ, K. (1997): The Linnean hierarchy and the
evolutionization of taxonomy, with emphasis on the problem of
nomenclature. Aliso, 15 (in press)
DE QUEIROZ, K. & GAUTHIER, J. (1990): Phylogeny as a
central principle in taxonomy: Phylogenetic definitions of
taxon names. Syst. Zool., 39(4): 307-322
DE QUEIROZ, K. & GAUTHIER, J. (1992): Phylogenetic
taxonomy. Annu. Rev. Ecol. Syst., 23: 449-480
DE QUEIROZ, K. & GAUTHIER, J. (1994): Toward a
phylogenetic system of biological nomenclature. Trends
Ecol. Evol., 9: 27-31
DOMINGUEZ, E. & WHEELER, Q.D. (1997): Taxonomic stability
is ignorance. Cladistics, 13(4): 367-372
LUCAS, S.G. (1992): Extinction and the definition of the
class Mammalia. Syst. Biol., 41(3): 370-371
ROWE, T. & GAUTHIER, J. (1992): Ancestry, paleontology,
and definition of the name Mammalia. Syst. Biol.,
41(3): 372-378
SCHANDER, C. & THOLLESSON, M. (1995): Phylogenetic
taxonomy - Some comments. Zool. Scr., 24:
263-268
SUNDBERG, P. & PLEIJEL, E. (1994): Phylogenetic
classification and the definition of taxon names. Zool.
Scr., 23:, 19-25
WILLMANN, R. (1989): Paleontology and the systematization of
natural taxa. pp. 267-291 in: SCHMIDT-KITTLER, N. &
WILLMANN, R. (eds.) (1989): Phylogeny and the Classification
of Fossil and Recent Organisms. - Abh. naturwiss. Ver.
Hamburg, (NF) 28: 300 pp.
WYSS, A.R. & MENG, J. (1996): Application of Phylogenetic
Taxonomy to poorly resolved crown clades: A stem-modified
node-based definition of Rodentia. Syst. Biol.,
45(4): 559-568
SYNONYMY:
There are two fundamentally different types of
synonymy, which can either be involved separately, or in
combination:
- Nomenclatural synonymy or ranking
synonymy:
Definition: synonyms according to currently valid rules of
biological nomenclature (e.g. IRZN).
- Volumetrical synonymy (KLUGE pers.
comm.):
Definition: taxa that refer to the same clade, or have the
same content or volume, as defined by the referring
authors.
A general problem of the current International
Rules of Zoological Nomenclature (IRZN) is the obligatory use
of categorical ranks in combination with typified names
(names based on a type species or type taxon), and the
so-called Principle of Coordination (Art. 36 IRZN). This
problem is most difficult above the species-group level,
since the above mentioned principles imply the most
unfortunate circumstance that the names of different taxa
with very different taxonomic content may have to be regarded
as nomenclatural synonyms. For example all taxa of family
rank that include the type species Libellula
quadrimaculata LINNAEUS, 1758 are synonyms of
Libellulidae LEACH, 1815, although they could theoretically
include any group of odonates from the complete
pan-monophylum Odonatoptera to just the single type species.
This is a quite unsatisfactory situation from the viewpoint
of Phylogenetic Taxonomy, since only the content of the taxa
is of biological interest, while it is actually completely
irrelevant within traditional taxonomy. I therefore decided
to include in my synonymy of the "higher" taxa of
Odonatoptera the mere nomenclatural synonyms as well as the
volumetrical synonyms. This goal of course requires an
adequate terminology that unequivocally indicates the type of
synonymy involved. This is achieved by the following
provisions:
- The citation of a new taxonomic name is
immediately followed by the author and publication year,
except when it is listed as a volumetrical synonym. In the
latter case there is a "sensu" between
taxon name and author. After the citation of a new
taxonomic name there may be a statement in parentheses
about the originally proposed categorical rank of the new
taxon (taxon nov., superfam. nov., fam. nov., subfam. nov.,
trib. nov., subtrib. nov., gen. nov., spec. nov.).
Furthermore there may be an additional statement in
parentheses about the nomenclatural status of the taxon
(nom. imperf., obj. inv. name, obj. jun. syn., subj. jun.
syn., homonym, etc.).
- In case of a subsequent citation, there is also
a "sensu" between taxon-name and author
in case of complete volumetrical synonymy, while there is
only a "; " between taxon-name and author in case
of mere nomenclatural synonymy. A subsequent citation may
be followed by a statement in parentheses about the
taxonomical change suggested by the referring author (stat.
nov., stat. rest., sens. nov., nom. correct.).
- Available Taxa that are volumetrical synonyms,
but not nomenclatural synonyms, are listed in square
brackets "[...]". The latter case mostly occurs
when a higher taxon or a genus-group taxon corresponds to a
family-group taxon or vice versa.
- Nomina nuda and unpublished manuscript names
(unavailable names) as well as junior homonyms, junior
objective synonyms and totally suppressed names
(objectively invalid names) are listed in braces
"{...}".
- Polyphyletic and paraphyletic taxa are
indicated by quotation marks and are listed in the synonymy
of the closest monophyletic taxa in two different
ways:
a) They are listed as "partial" volumetrical
synonyms in the synonymy of the least inclusive clade that
includes the complete polyphylum or paraphylum:
... in the case of the original description they are
indicated as ...: incl. "Taxon" AUTHOR
date;
... in the case of a subsequent usage they are indicated as
...: incl. "Taxon"; AUTHOR date.
b) They are listed as "partial" volumetrical
synonyms in the synonymies of all those monophyla that
together constitute the polyphyletic or paraphyletic
group:
... in the case of the original description they are
indicated as ...: partim "Taxon" AUTHOR
date;
... in the case of a subsequent usage they are indicated as
...: partim "Taxon"; AUTHOR date.
- Monophyletic taxa that have been preliminarily
synonymised with the next superordinated monophylum,
because their recognition would result in a paraphyletic
rest-group, are listed as mere nomenclatural synonyms in
the synonymy of the superordinated monophylum:
... in the case of the original description they are
indicated as ...: incl. Taxon AUTHOR date (jun.
subj. syn.);
... in the case of a subsequent usage they are indicated as
...: incl. Taxon; AUTHOR date.
- The so-called "légions" of
Selys-Longchamps are rejected, since they are clearly not
available as family-group taxa according to Art. 11(f)
IRZN. They can only be regarded as informal names
(vernacular or trivial names).
TAXONOMIC TERMINOLOGY & ABBREVIATIONS:
- comb. nov. = combinatio nova (generally
indicating that a species is transferred to a different
genus)
- hic = here in citation (referring to the
present publication)
- ICZN = International Commision of Zoological
Nomenclature
- incertae sedis = indicating an
uncertain phylogenetic position within a clade
- incorr. orig. spell. = (intentional or
unintentional) incorrect original spelling (nomen
imperfectum and nomen negatum), which has no separate
availability in the original form and has to be corrected
through a justified emendation
- incorr. subseq. spell. = incorrect subsequent spelling
(unavailable name / nomen nullum) through a not
demonstrably intentional change in the original
spelling
- IRZN = International Rules of Zoological
Nomenclature (the "Code")
- jun. hom. = junior homonym (objectively invalid
name)
- jun. obj. syn. = junior objective synonym
(objectively invalid name)
- jun. subj. syn. = junior subjective synonym
(subjectively invalid name)
- nom. amb. = nomen ambiquum
- nom. conserv., ICZN Opinion ..., ... = nomen
conservandum, a previously unavailable or invalid name
which was conserved by a ruling of the Commission (ICZN
Opinion), according to Art. 79 IRZN
- nom. correct. = correct subsequent spelling (nomen
correctum) through justified emendation, thus a
demonstrably intentional correction of an incorrect
original spelling, which takes the authorship of the
original spelling
- nom. dub. = nomen dubium
- nom. imperf. = nomen imperfectum (imperfect
name), e.g. an incorrect original spelling or an imperfect
subsequent spelling through mandatory change
- nom. non rite publ. = nomen non rite publicatum
(unpublished manuscript name), ineditus according Art. 8
IRZN (also including new scientific names in unpublished
theses) (unavailable name)
- nom. nud. = nomen nudum (unavailable name, with
lacking description or indication of a description)
- nom. oblit., ICZN Opinion ..., ... = nomen
oblitum, rejected by a ruling of the Commision (ICZN
Opinion), according to Art. 23b IRZN (in force between 6
Nov., 1961 and 1 Jan., 1973) (objectively invalid
name)
- obj. inv., ICZN Opinion ..., ... = objectively
invalid name, which was previously available and valid, but
became suppressed or rejected by a ruling of the Commision
(ICZN Opinion), according to Art. 79 IRZN
- pend. decis. ICZN = pending decision by the
plenary power (ruling according to Art. 79 IRZN) of the
Commision (ICZN)
- sedis mutabilis = indicating a
(uncertain) phylogenetic position in an unresolved polytomy
within a clade
- sen. obj. syn. = senior objective synonym
- sen. subj. syn. = senior subjective
synonym
- sensu auct. (except AUTHOR, date) = in
the sense of all previous authors, except the one
cited
- sens. nov. = sensu novo (indicating an
emended diagnosis of a taxon)
- s.l. = sensu lato
- s.str. = sensu stricto
- stat. nov. (nom. transl. ex Taxon AUTHOR, date)
= status novus (nomen translatum) with mandatory change in spelling
- taxon nov. = a new higher taxon (taxon novum),
above family-group rank, thus beyond the scope governed by
the IRZN
- unjust. emend. = unjustified emendation, thus a
demonstrably intentional change in the (correct or
incorrect) original spelling, which is not a correction of
an incorrect original spelling (justified emendation); an
unjustified emendation is available with its own author and
date (nomen vanum) as objective junior synonym of the name
in its original spelling
- Xus AUTHOR, date, nom. subst. pro
Yus AUTHOR, date, nec Yus AUTHOR, date =
nomen novum as replacement name (nomen substitutum) for
junior homonym, since the latter represents an objectively
invalid name which is preoccupied by the senior
homonym
A very good glossary
of taxonomic terminology can be downloaded from the
website of BIOSIS.
The terminology of Phylogenetic Systematics is
thoroughly explained and discussed in my Glossary of Phylogenetic
Systematics.